Geri
AKADEMİK

(Liste, ünvan ve isme göre alfabetik olarak sıralanmıştır.)

Kurum İçi Görevlendirme

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Adı Soyadı Prof.Dr. Reda ALHAJJ
E-Posta ralhajj@medipol.edu.tr
Detay Öz Geçmiş
Medya

Daha Önce Görev Yaptığı Yerler

Araştırma Alanları

Seçili Yayınları / Tüm Yayınları

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Adı Soyadı Doç.Dr. Deniz Ufuk ERBULUT
E-Posta uerbulut@medipol.edu.tr
Detay Öz Geçmiş
Medya

Kırıkkale Üniversitesi 2001 Swinburne University of Technology ve The University of Melbourne

Daha Önce Görev Yaptığı Yerler

Koç Üniversitesi (Araştırmacı Yardımcı Doçent), The University of Toledo (OH, ABD) ve Koç Üniversitesi (postdoc).

Araştırma Alanları

Ortopedi ve Omurga Biyomekaniği, Sonlu Eleman Modelleme ve Analizleri, Protez ve İmpilant Geliştirme ve Testleri

Seçili Yayınları / Tüm Yayınları

D.U. Erbulut, I. Zafarparandah, A.F. Ozer, " Effect of Sagittal Plane Translation of a Cervical Artificial Disc Replacement", 2014 . (Under preparation)
D.U. Erbulut, I. Zafarparandah, C.R. Hassan, I. Lazoglu, A.F. Ozer, "Determination of the biomechanical effect of an interspinous process device on implanted and adjacent lumbar spinal segments using a hybrid testing protocol: a finite element study" The Journal of Neurosurgery:Spine , 2014 . (doi: 10.3171/2014.12.SPINE14419)
Hassan, C.R., Zafarparandeh, I., Erbulut, D.U., Lazoglu, I., Ozer, A.F. Biomechanical Evaluation of L4-L5 Spinal Motion Segment using an Asymmetrical Finite Element Model. Invited manuscript submitted to Journal of Biomedical Engineering and Systems for publication., 2014
D.U. Erbulut, I. Zafarparandah, I. Lazoglu, A.F. Ozer, " Application of an asymmetric finite element model of the C2-T1 cervical spine in evaluating the role of soft tissues in stability" Medical Engineering and Physics, 2013 36(7):915-21. (doi:10.1016/j.medengphy.2014.02.020)
D.U. Erbulut, T. Oktenoglu, V. K. Goel, A. F. Ozer, Ismail Lazoglu " Pedicle screw-based posterior dynamic stabilization of the lumbar spine: in vitro cadaver investigation and a finite element study" Computer Methods in Biomech and Biomedical Engineering, 2013 (doi:10.1080/10255842.2014.890187)
D.U. Erbulut, T. Oktenoglu, I. Lazoglu, V. K. Goel, A. F. Ozer, " Stabilization of the Lumbar Spine with a Posterior Dynamic Instrumentation with Low Stiff Rod and Hinged Screw: A Computational Study" Journal of Biomechanical Engineering, 2013 136(5):051007 (doi: 10.1115/1.4027060)
D.U. Erbulut," Biomechanics of neck injuries resulting from rear-end vehicle collisions" Turkish Neurosurgery, 2013 24(4):466-70 (doi:10.5137/1019-5149.JTN.9218-13.1)
I. Zafarparandah, D.U. Erbulut, I. Lazoglu, A.F Ozer, " Development of a finite element model of the human cervical spine" Turkish Neurosurgery, 2013; 24(3):312-8 (doi: 10.5137/1019-5149.JTN.8486-13.0).
D.U. Erbulut, A. Fahir Ozer, V.K. Goel, “Biomechanics of Posterior Dynamic Stabilization: A Review” Advances in Orthopedic, 2013; (6) (doi: 10.1155/2013/451956)
D.U. Erbulut, S.H. Masood, H. Senko, K. Davies, “Preheating of Poly(Ethylene Terephthalate) Preform for Stretch Blow Moulding Using Microwave ” Journal of Applied Polymer Science 2009;112(3):1670-1679
H. Haddad, S. Masood, D.U. Erbulut, "A Study of Blow Moulding Simulation and Structural Analysis for Pet Bottles" Australian Journal of Mechanical Engineering 2009;7(1):69-76
D.U. Erbulut, S.H. Masood, V.N. Tran and I. Sbarski “ A Novel Approach of Measuring the Dielectric Properties of PET Preforms of Stretch Blow Moulding”, Journal of Applied Polymer Science 2008;109(5):3196-3203

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Adı Soyadı Doç.Dr. Yasemin YÜKSEL DURMAZ
E-Posta ydurmaz@medipol.edu.tr
Detay Öz Geçmiş
Medya

Yıldız Teknik Üniversitesi 2003 İstanbul Teknik Üniversitesi

Daha Önce Görev Yaptığı Yerler

University of Michigan (2010-2014 Postdoc)

Araştırma Alanları

Gen Tasimak icin ideal vektorlerin gelistirilmesi, Kontrollu İlac Tasıma Sistemleri, Hedefli Kanser Tedavisi icin Akıllı Parcacıklar Gelistirilmesi, Ultrason Gorüntüleme ve Tedavi Ajanları, Karmasik makromolekullerin tasarlanmasi ve sentezi

Seçili Yayınları / Tüm Yayınları

1. The Effects of Ultrasound Frequency on Nanodroplet-Mediated Histotripsy, E Vlaisavljevich, O Aydin, KW Lin, YY Durmaz, B Fowlkes, MEH ElSayed, Z Xu, Ultrasound in Medicine and Biology, 2015, 41(8), 2135-2147.
2. Development of Nanodroplets for Histotripsy-Mediated Cell Ablation, Y. Y. Durmaz, E. Vlaisavljevich, Z. Xu, M.E.H ElSayed, Molecular Pharmaceutics, 2014, 11(10), 3685-3695.
3. Nanodroplet-Mediated Histotripsy for Image-guided Targeted Ultrasound Cell Ablation, E. Vlaisavljevich, Y. Y. Durmaz, A. Maxwell, M.E.H. ElSayed, Zhen Xu, Theranostics, 2013, 3(11), 802-815.
4. Synergistic Combination of Small Molecule Inhibitor and RNA interference Against Anti-apoptotic Bcl-2 Protein in Head and Neck Cancer Cells, Y-L. Lin, Y. Y. Durmaz, J. E. Nör, M. E. H. ElSayed, Molecular Pharmaceutics, 2013, 10, 2730-2738.
5. Development of Degradable, pH-Sensitive Star Vectors for Enhancing the Cytoplasmic Delivery of Nucleic Acids, Y. Y. Durmaz, Y-L. Lin, M. E. H. ElSayed, Advanced Functional Materials, 2013, 23(31), 3885-3895.
6. Targeting Hepatic Cancer Cells with PEGylated Dendrimers Displaying N-Acetylgalactosamine and SP94 Peptide Ligands, S. H. Medina, G. Tiruchinapally, M. V. Chevliakov,
Y. Y. Durmaz, R. N. Stender, W. D. Ensminger, D. S. Shewach, M. E. H. ElSayed, Advanced Healthcare Materials, 2013, 2(10), 1337-1350.
7. Enzyme-Activated Nanoconjugates for Tunable Release of Doxorubicin in Hepatic Cancer Cells, S. H. Medina, M. V. Chevliakov, G. Tiruchinapally, Y. Y. Durmaz, S. P. Kuruvilla, M. E.H. ElSayed, Biometerials, 2013, 36, 4655-4666.
8. A Novel Poly(p-phenylene) Containing Alternating Poly(perfluorooctylethyl acrylate-co-methyl methacrylate) and Polystyrene Grafts by Combination of Atom Transfer Radical Polymerization and Suzuki Coupling Processes, Y. Y. Durmaz, E. L. Sahkulubey, Y. Yagci, E. Martinelli, G. Galli, Journal of Polymer Science Part A: Polymer Chemistry 2012, 50(23), 4911-4919
9. New Photoinitiating Systems for Cationic Polymerization Acting at Near UV and Visible Range, B. Aydogan, Y. Y. Durmaz, M. U. Kahveci, M. Uygun, M. A. Tasdelen, Y. Yagci, Macromolar Symposia 2011, 308, 25-34.
10. Film Formation of Poly(methyl metacrylate) Latex with Pyrene Functional Poly(divinylbenzene) Microspheres Prepared by Click Chemistry, S. Ugur, O. Yargi, Y. Y. Durmaz, B. Karagoz, N. Bicak, Y. Yagci, O. Pekcan, Polymer Composites, 2011, 32(6), 869-881.
11. Modification of Poly(divinylbenzene) Microspheres by Hydrobromination-Click Chemistry Protocol and Their Protein Adsorption Properties, Y. Y. Durmaz, B. Karagoz, N. Bicak, D. Odaci, E. Yalcinkaya, S. Timur, Y. Yagci, Macromolecular Bioscience, 2011, 11, 141-150.
12. Perfectly Alternating Amphiphilic Poly(p-phenylene) Graft Copolymers by Combination of Controlled Radical Polymerization and Suzuki Coupling Processes, E. L. Sahkulubey, Y. Y. Durmaz, Y. Yagci Macromolecules 2010, 43, 2732–2738.
13. Surface Modification of Cured Epoxy Network by Click Chemistry, Y. Y. Durmaz, M. Sangermano, Y. Yagci, Journal of Polymer Science Part A: Polymer Chemistry 2010, 48, 2862–2868.
14. Peculiarities of ?- and ?-Relaxations in Polymers with Cyanobiphenyl Liquid Crystalline Side Chains of different Lengths, F. Salehli, S. Yildiz, H. Ozbek, E. Uykur, Y. H. Gursel, Y. Y. Durmaz, Polymer 2010, 51, 1450-1456.
15. Synthesis and Characterization of Telechelic Polymers by Combination of Atom Transfer Radical Polymerization and Click Chemistry Processes, S. S. Okcu, Y. Y. Durmaz, Y. Yagci, Designed Monomer& Polymer 2010, 13, 459-472.
16. Synthesis and Characterization of Polystyrene Possessing Triptycene Units in the Main Chain by Combination of ATRP and Click Chemistry Processes, S. Ates, Y. Y. Durmaz, L. Torun, Y. Yagci, Journal of Macromolecular Science Part A: Pure and Applied Chemistry 2010, 47(8), 809-815.
17. Photoinduced Decomposition of Dibenzoyldiethylgermane: A Photochemical Route to Polygermanes, Y. Y. Durmaz, M. Kukut, N. Monszner, Y. Yagci, Macromolecules, 2009, 42, 2899-2902.
18. Graft Copolymers by the Combination of ATRP and Photochemical Acylation Process by Using Benzodioxinones, Y. Y. Durmaz, V. Kumbaraci, A. L. Demirel, N. Talinli, Y. Yagci, Macromolecules 2009, 42, 7343-3749.
19. Sequential Photodecomposition of Bisacylgermane Type Photoinitiator: Synthesis of Block Copolymers by Combination of Free Radical Promoted Cationic and Free Radical Polymerization Mechanisms, Y. Y. Durmaz, M. Kukut, N. Monszner, Y. Yagci, Journal of Polymer Science Part A: Polymer Chemistry 2009, 47, 4793–4799.
20. Functionalization of Poly(divinylbenzene) Microspheres via Click Chemistry Proceeses, B. Karagoz, Y. Y. Durmaz, B. N. Gacal, N. Bicak, Y. Yagci, Designed Monomer.& Polymer, 2009, 12, 511–522.
21. Dielectric Relaxation in a Thermotropic Side Chain Liquid Crystalline Polymer with Nematic Reentrant Phase F. Salehli, S. Yıldız, H. Ozbek, Y. H. Gursel, Y Y. Durmaz, Jornal of Physics: Condens. Matter, 2008, 20, 35106.
22. A New Photoiniferter/RAFT Agent for Ambient Temperature Rapid and Well-Controlled Radical Polymerization, M. A. Tasdelen, Y. Y. Durmaz, B. Karagoz, N. Bicak, Yusuf Yagci, Journal of Polymer Science Part A: Polymer Chemistry 2008, 46, 3387-3395.
23. Diethoxy-azobis(pyridinium) Salt as Photoinitiator for Cationic Polymerization: Towards Wavelength Tunability by Cis-Trans Isomerization, Y. Y. Durmaz, O. Zaim, Y. Yagci, Macrolomol. Rapid Communication 2008, 29, 892-896.
24. Synthesis, Characterization and Thermally Activated Curing of Azobenzene Containing Benzoxazines, B. Kiskan, F. Dogan, Y. Y. Durmaz, Y. Yagci, Designed Monomer& Polymer 2008, 11, 473–482.
25. Synthesis of Block Copolymers by Combination of ATRP and Photoiniferter Processes, Y.Y. Durmaz, B. Karagoz, N. Bicak, Y. Yagci, Polymer International 2008, 57, 1182–1187.
26. Visible Light Initiated Free Radical Promoted Cationic Polymerization by Using Acylgermane Based Photoinitiator in the Presence of Onium Salts, Y. Y. Durmaz, N. Moszner, Y. Yagci, Macromolecules 2008, 41, 6714-6718.
27. Use of Atom Transfer Radical Coupling Reactions for the Synthesis of Various Macromolecular Structure, Y. Y. Durmaz, B. Aydogan, I. Cianga, Y. Yagci, Polymer Preprints 2008, 49(2), 382-383.
28. N-alkoxy Pyridinium Ion Terminated Polystyrene: A Facile Route to Photoinduced Block Copolymerization, Y. Y. Durmaz, G. Yılmaz Y. Yagci, Journal of Polymer Science Part A: Polymer Chemistry 2007, 45 (3), 423-428.
29. Phenacyl Onium Salt Photoinitiators: Synthesis, Photolysis and Applications, Y. Yagci, Y. Y. Durmaz, B. Aydogan, Chemical Record 2007, 7, 78-90.
30. Polymers with Side Chain N-Alkoxy Pyridinium Ions as Precursors for Photoinduced Grafting and Modification Processes Y. Y. Durmaz, G. Yilmaz, Y. Yagci, Macromolecular Chemistry Physics 2007, 208, 1737-1743.
31. Studies on the Preparation of Telechelic Polymer by Atom Transfer Radical Polymerization and Cross Coupling Processes, Y. Y. Durmaz, I. Cianga, Y. Yagci, e-polymer 2006, 50.

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Adı Soyadı Doç.Dr. Mehmet Kemal ÖZDEMİR
E-Posta mkozdemir@medipol.edu.tr
Detay Öz Geçmiş
Medya

Orta Doğu Teknik Üniversitesi 1996 Syracuse Üniversitesi

Daha Önce Görev Yaptığı Yerler

İstanbul Şehir Üniversitesi, CSI Canada, Logus Broadband Wireless Communication, Philips

Araştırma Alanları

Kablosuz Haberleşme Sistemleri, Yönlü Kanal Modelleme, Almaç algoritmaları, Pasif Radar, 5G Masif MIMO Sistemleri, OFDMA/CDMA tabanlı sistem tasarımları (PHY + MAC)

Seçili Yayınları / Tüm Yayınları

• Thet, Nann Win Moe, Mehmet Kemal Ozdemir, and Amit Kachroo. "Reduced-rank joint estimation of DOA with mutual coupling." 2018 26th Signal Processing and • Communications Applications Conference (SIU). IEEE, 2018.
• Karabacak, M., Mohammed, A. H., Özdemir, M. K., & Arslan, H. (2018). RF Circuit Implementation of a Real-Time Frequency Spread Emulator. IEEE Transactions on Instrumentation and Measurement, 67(1), 241-243.
• M Yilan, MK Özdemir, “Traffic density estimation via KDE and nonlinear LS”, TURKISH JOURNAL OF ELECTRICAL ENGINEERING & COMPUTER SCIENCES, 2017.
• N Mehrnia, MK Ozdemir, “Novel maritime channel models for millimeter radiowaves”, Software, Telecommunications and Computer Networks (SoftCOM), 2016 24th, 2016.
• A Kachroo, MK Ozdemir, H Tekiner-Mogulkoc, “Optimization of LTE radio resource block allocation for maritime channels”, Sarnoff Symposium, 2016 IEEE 37th, 88-93, 2016.
• MZ Karakuşak, K Özdemir, V Aslantaş, “The use of RSS and NI filtering for the Wireless indoor localization and tracking of mobile robots with different motion models”, Signal Processing and Communication Application Conference (SIU), 2016 24th, 2016.
• AH Mohammed, MK Ozdemir, “A Directional FM Channel Model for Contemporary Wireless Systems”, Canadian Journal of Electrical and Computer Engineering 39 (4), 311-321, 2016.
• E Ozdemir, AE Topcu, MK Ozdemir, “A hybrid HMM model for travel path inference with sparse GPS samples”, Transportation, 1-14, 2016.
• H Abuella, MK Ozdemir, “Automatic Modulation Classification Based on Kernel Density Estimation”, Canadian Journal of Electrical and Computer Engineering 39 (3), 203-209.
• Soheil Salari, S. ShahbazPanahi, and M. K. Ozdemir, “Mobility-aided Wireless Sensor Network Localization via Semidefinite Programming” IEEE Wireless Communication, 2013.
• Ozcan, H., Ozdemir, K. and Ciloglu, H. "Optimum cost of an air cooling system by using differential evolution and particle swarm algorithms" Elsevier Energy and Buildings, Vol. 65,pp. 93–100, Oct. 2013.
• M. Z. Amirani, S. ShahbazPanahi, and M. K. Ozdemir, “Performance Comparison in Amplify-and-Forward Bi-directional Network Beamforming”, to appear in IEEE Signal Processing, 2012.
• M. Zheng and M. K. Ozdemir, “GPS-aided Doppler Spread Estimation in a Mobile System”, 26th Queen's Biennial Symposium on Communications, Kingston, Ontario Canada, 2012.
• F. Retnasothie and M. K. Ozdemir, “A multiband SDR solution for next generation wireless systems,” United States Patent Application 20090170444, Jun. 2009.
• H. A. Mahmoud, M. K. Ozdemir, and H. Arslan, “An Efficient Ranging Algorithm for WiMAX
(802.16e) OFDMA,” Elsevier Computer Communications  Vol. 32, Issue 1 Jan 2009.
• H. A. Mahmoud, M. K. Ozdemir, F. E. Retnasothie, and H. Arslan, “IQ Imbalance Correction for OFDMA Uplink Systems,” ICC 2009 Signal Processing for Commun. Symp., Sep. 2008.
• M. K. Ozdemir and H. Arslan, “Channel estimation for wireless OFDM systems," IEEE Commun. Surveys & Tutorials, vol. 9, no. 2, pp. 18--48, Oct. 2007.
• M. K. Ozdemir, H. Arslan, and E. Arvas, “Towards real-time adaptive low-rank LMMSE channel estimation of MIMO-OFDM systems," IEEE Trans. on Wireless Commun, vol. 5, no. 10, pp. 2675--2678, Oct. 2006.
• M. K. Ozdemir, H. Arslan, and E. Arvas, “Dynamics of spatial correlation and implications on MIMO systems," IEEE Commun. Mag., vol. 42, no. 6, pp. 48--53, June 2004.
• H. A. Mahmoud, M. K. Ozdemir, and H. Arslan, “Initial Ranging for WiMAX (802.16e) OFDMA," in Proc. Military Commun. Conf., Washington, DC, Oct. 2006.
• M. K. Ozdemir, H. Arslan, and E. Arvas, “Adaptive low-rank MIMO-OFDM channel estimation," in Proc. IEEE Wireless and Microwave Technol. Conf., vol. 1, Clearwater, FL, Apr. 2005.
M. K. Ozdemir, H. Arslan, and E. Arvas, “MIMO-OFDM channel estimation for correlated fading channels," in Proc. IEEE Wireless and Microwave Technol. Conf., vol. 1, Clearwater, FL, Apr. 2004.

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Adı Soyadı Dr.Öğr.Üye. Tunçer BAYKAŞ
E-Posta tbaykas@medipol.edu.tr
Detay Öz Geçmiş
Medya

Boğaziçi Üniversitesi 2000 Ottawa Üniversitesi

Daha Önce Görev Yaptığı Yerler

National Institute of Communications and Information Technology Japan Tohoku University

Araştırma Alanları

Haberleşme Sistemleri, Telsiz Haberleşme ve Uygulamaları, Fiziksel Katman Tasarımı, 60 GHz Sistemler

Seçili Yayınları / Tüm Yayınları

Baykas, T.; Kasslin, M.; Cummings, M.; Hyunduk Kang; Kwak, J.; Paine, R.; Reznik, A.; Saeed, R.; Shellhammer, S.J., "Developing a standard for TV white space coexistence: technical challenges and solution approaches," Wireless Communications, IEEE , vol.19, no.1, pp.10,22, February 2012 doi: 10.1109/MWC.2012.6155872
URL: http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=6155872&isnumber=6155865

Baykas. T.; Sum C.S.; Lan Z. ; Rahman M.A.; Harada H.; Kato S.;, “IEEE 802.15.3c: The First IEEE Wireless Standard for Data Rates Over 1 Gbps”, Communications Magazine, IEEE , vol.49, no.7, pp.114-121, July 2011
doi: 10.1109/MCOM.2011.5936164
URL: http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=5936164&isnumber=5936142

Baykas, T.; Siala, M.; Yongacoglu, A.; , "Generalized decorrelating discrete-time RAKE receiver," Wireless Communications, IEEE Transactions on , vol.6, no.12, pp.4268-4274, December 2007
doi: 10.1109/TWC.2007.060392
URL: http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=4400794&isnumber=4400779

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Adı Soyadı Dr.Öğr.Üye. Mehmet Hikmet ÜÇIŞIK
E-Posta mhucisik@medipol.edu.tr
Detay Öz Geçmiş
Medya

Boğaziçi Üniversitesi 2004 Universität für Bodenkultur Wien

Daha Önce Görev Yaptığı Yerler

• TU Delft, Hollanda • İstanbul Teknik Üniversitesi, Türkiye • University of Natural Resources and Life Sciences Vienna, Austria

Araştırma Alanları

• Nanobioteknoloji • Nanopartiküler İlaç İletim Sistemleri • Yüzey fonksiyonlandırma • Hücre hedefleme • Lipid taşıyıcı sistemler (örn. emulsomlar)

Seçili Yayınları / Tüm Yayınları

Ucisik, M. H., Küpcü, S.*, Debreczeny, M., Schuster, B. and Sleytr, U. B.* (2013) S layer Coated Emulsomes as Potential Nanocarriers. Small, 9: 2895 2904.
Ucisik M.H.*, Küpcü S., Schuster B., Sleytr U.B. (2013) Characterization of CurcuEmulsomes: Nanoformulation for Enhanced Solubility and Delivery of Curcumin, Journal of Nanobiotechnology, 11:37:1-13.
Ucisik M.H.*, Küpcü S., Breitwieser A., Gelbmann N., Schuster B., Sleytr U.B. (2015) S-layer Fusion Protein as a Tool functionalizing Emulsomes and CurcuEmulsomes for Antibody Binding and Targeting, Colloids and Surfaces B: Biointerfaces, 128, 132-139
Ucisik M.H.*, Schuster B., Sleyt U.B. (2015) Emulsomes meet S-layer Proteins: An emerging Targeted Drug Delivery System, Current Pharmaceutical Biotechnology, 16:4, 392-405
Ruff L.E.*, Uzri D., Fecteau J.-F., Ucisik M.H., Messmer B.T.* (2016) DeNAno: a novel multivalent affinity reagent, in: “Rolling Circle Amplification (RCA): Toward New Clinical Diagnostics and Therapeutics, Edited by Dr. V. Demidov”, Springer, 161-168.

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Adı Soyadı Dr.Öğr.Üye. Özge ŞENSOY
E-Posta osensoy@medipol.edu.tr
Detay Öz Geçmiş
Medya

İstanbul Teknik Üniversitesi 2005 Koç Üniversitesi-Hesaplamalı Bilimler ve Mühendislik

Daha Önce Görev Yaptığı Yerler

Weill Cornell Tıp Okulu

Araştırma Alanları

G-protein-kenetli reseptör sinyal iletimi, yönlendirilmiş hücre sinyalleşmesi,yan etkisi azaltılmış bilgisayar ortamında ilaç dizaynı,hücre zarı deforme etmesine yardımcı peptitlerin yapısal ve dinamik yönden incelenmesi,peptit bazlı nanomalzemelerin termodinamik yönden incelenmesi

Seçili Yayınları / Tüm Yayınları

1.Özge Şensoy, Ali Rana Atılgan, Canan Atılgan : FbpA iron storage and release are governed by periplasmic microenvironments. PCCP. 19 (8) : 6064-6075, 2017
2.Ozge Sensoy, Irina S. Moreira, Giulia Morra : Understanding the Differential Selectivity of Arrestins toward the Phosphorylation State of the Receptor. ACS Chem. Neurosci.. 7 (9) : 1212-1224, 2016
3. Margarita Arango-Lievano, Ozge Sensoy, Amélie Borie, Maithé Corbani, Gilles Guillon, Pierre Sokoloff, Harel Weinstein and Freddy Jeanneteau. A GIPC1-palmitate switch modulates dopamine Drd3 receptor trafficking and signaling. Molecular and Cellular Biology, 2016, 36, 1019-31.
4. Sensoy, O., Weinstein, H. “Computational modeling of the mechanistic role of helix 8 in GPCRs: The interaction of the dopamine 2 receptor C-terminus with the PDZ domain of GIPC1”. BBA Biomembranes - 1848 (2015) 976–983
5. Dalgicdir, C., Sensoy, O., Peter, C., Sayar, M. “A transferable coarse-grained model for diphenylalanine: How to represent an environment driven conformational transition” The Journal of Chemical Physics, 2013; 139, 234115.
6. Bakota,E.L., Sensoy, O., Ozgur, B., Sayar, M., Hartgerink, J.D. “Self-Assembling Multidomain Peptide Fibers with Aromatic Cores” Biomacromolecules, 2013; 14, 1370.
7. Engin*, O., Sayar, M. “Adsorption, folding, and packing of an amphiphilic peptide at the air/water interface” Journal of Physical Chemistry B, 2012; 116, 2198.
8. Engin*, O., Villa, A., Peter, C., Sayar, M. “A Challenge for Peptide Coarse Graining: Transferability of Fragment Based Models” Macromolecular Theory and Simulations, 2011, 20, 451.
9. Engin*, O., Villa, A., Sayar, M., Hess, B. “Driving Force for Adsorption of Amphiphilic Peptides to Air/Water Interface.” Journal of Physical Chemistry B, 2010, 114, 11093.
(Also appeared in Gromacs Manual)
10. Engin*, O., Sayar, M., Erman, B. “The introduction of hydrogen bond and hydrophobicity effects into the rotational isomeric states model for conformational analysis of unfolded peptides.” Physical Biology, 2009, 6, 016001.
11. Engin*, O., Sayar, M. “Investigation of Structure of Amphiphilic Peptides in Different Environments via Replica- Exchange Molecular Dynamics Simulations.” John von Neumann Institute for Computing, NIC Series, 2008.

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Adı Soyadı Dr.Öğr.Üye. Cüneyd PARLAYAN
E-Posta cparlayan@medipol.edu.tr
Detay Öz Geçmiş
Medya

Toronto Universitesi 2008 Tokyo Medical and Dental University

Daha Önce Görev Yaptığı Yerler

Ulasal kanser Arastirma Merkezi, Tokyo/Japonya

Araştırma Alanları

Kanser epidemiologisi ve genetigi, Kanserde OMICS uygulamalari ve analizi, Kisilestirilmis tip

Seçili Yayınları / Tüm Yayınları

1. Parlayan C, Ikeda S, Sato N, Sawabe M, Muramatsu M, Arai M (2014) Association analysis of single nucleotide polymorphisms in miR-146a and miR-196a2 on the prevalence of cancer in elderly Japanese population: a case–control study. Asian Pac J Cancer Prev, 15 (5), 2101-2107.
2. Tani Y*, Parlayan C*, Takai Y, Kawai A, Unuma Y, Kinoshita H, Kondo T. Evaluation of narrow range IPG gels in a novel automated two-dimensional gel electrophoresis machine, Auto2D. Electrophoresis Letters Vol.59 (2015) No.1, p.9-12. (*: Equal contribution)
3. Parlayan C, Asano N, Yoshida A, Kawai A, Kondo T. (2014) Current status of global expression profiling of sarcoma; meta-analysis for clinical applications. Cancer Research (under review)

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Adı Soyadı Dr.Öğr.Üye. Mehmet KOCATÜRK
E-Posta mkocaturk@medipol.edu.tr
Detay Öz Geçmiş
Medya

İstanbul Teknik Üniversitesi 2004 Bogaziçi Üniversitesi

Daha Önce Görev Yaptığı Yerler

Boğaziçi Üniverisitesi, Nortel Networks Netaş, Mobiarts GSM ve Yazılım Tek. Ltd. Şti.

Araştırma Alanları

Sinirsel Protezler, Beyin-Makine Arayüzü, Sinirbilim

Seçili Yayınları / Tüm Yayınları

Kocatürk, M., Gülçür, H. Ö., Canbeyli, R., Toward building hybrid biological/in silico neural networks for motor neuroprosthetic control , Frontiers in Neurorobotics, 2015.
Kocatürk, M., Gülçür, H. Ö., Canbeyli, R., Towards brain machine interfaces operating with spike-based models of neurons, Society for Neuroscience - Annual Meeting, 2014.
Kocatürk, M., Gülçür, H. Ö., Canbeyli, R., A workstation for development of brain machine interfaces using spiking neural networks , International Conference on Neurorehabilitation, 2012.
Kocatürk, M., Gülçür, H. Ö., Canbeyli, R., A real-time spiking neural network simulator combined with online spike sorting software, Society for Neuroscience - Annual Meeting, 2012.
Kocatürk, M., Gülçür, H. Ö., Canbeyli, R., BlueSpike: neural data acquisition, recording and online spike sorting software, Society for Neuroscience - Annual Meeting, 2011.
Kocatürk, M., Gülçür, H. Ö., Canbeyli, R., Chronic recordings from rat motor cortex for developing neural prostheses, 15th National Conference on Biomedical Engineering, 2010.

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Adı Soyadı Dr.Öğr.Üye. Emre KARAKOÇ
E-Posta ekarakoc@medipol.edu.tr
Detay Öz Geçmiş
Medya

Bilkent Üniversitesi 2002 Simon Fraser Universitesi

Daha Önce Görev Yaptığı Yerler

Washington Üniversitesi, Genom Bilimleri Max Planck Enstitüsü, Evrimsel Biyoloji ve Genetik

Araştırma Alanları

Hesapsal Biyoloji, Biyoenformatik, Kombinatorik algoritmalar, Yeni nesil dizileme metotları, Yapısal değişikler, Genetik karmaşık hastalıklar

Seçili Yayınları / Tüm Yayınları

Genomic resources for wildpopulations of the house mouse,Mus musculus and its close relative-
Mus spretus., Bettina Harr, Emre Karakoc, Rak Neme, Meike Teschke, Christine Pfeie, Zeljka
Pezer, Hiba Babiker, Miriam Linnenbrink, Inka Montero, Rick Scavetta, Mohammad Reza Abai,
Marta Puente Molins, Mathias Schlegel, Rainer G. Ulrich, Janine Altmuller, Marek Franitza, Anna
Buntge, Sven Kunzel, Diethard Tautz Nature Scientific Data doi:10.1038/sdata.2016.75

The evolution and functional impact of human deletion variants shared with archaic hominin
genomes., Lin Yen-Lung, Pavlidis P., Karakoc E., Ajay J., Gokcumen O. Mol. Biol. Evol. doi:
10.1093/molbev/msu405, 2015

The bonobo genome compared with the chimpanzee and human genomes., Prfer K, Munch K,
Hellmann I, Akagi K, Miller JR, Walenz B, Koren S, Sutton G, Kodira C, Winer R, Knight JR,
Mullikin JC, Meader SJ, Ponting CP, Lunter G, Higashino S, Hobolth A, Dutheil J, Karakoc E,
Alkan C, Sajjadian S, Catacchio CR, Ventura M, Marques-Bonet T, Eichler EE, Andr C, Atencia
R, Mugisha L, Junhold J, Patterson N, Siebauer M, Good JM, Fischer A, Ptak SE, Lachmann M,
Symer DE, Mailund T, Schierup MH, Andrs AM, Kelso J, Pbo S. Nature 486(7404):527-31, 2012

Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations.,
O’Roak BJ, Vives L, Girirajan S, Karakoc E, Krumm N, Coe BP, Levy R, Ko A, Lee C, Smith JD,
Turner EH, Stanaway IB, Vernot B, Malig M, Baker C, Reilly B, Akey JM, Borenstein E, Rieder
MJ, Nickerson DA, Bernier R, Shendure J, Eichler EE. Nature, 485(7397):246-50, 2012

Insights into hominid evolution from the gorilla genome sequence, Scally A, Dutheil JY, Hillier
LW, Jordan GE, Goodhead I, Herrero J, Hobolth A, Lappalainen T, Mailund T, Marques-Bonet T,
McCarthy S, Montgomery SH, Schwalie PC, Tang YA, Ward MC, Xue Y, Yngvadottir B, Alkan C,
Andersen LN, Ayub Q, Ball EV, Beal K, Bradley BJ, Chen Y, Clee CM, Fitzgerald S, Graves TA,
Gu Y, Heath P, Heger A, Karakoc E, Kolb-Kokocinski A, Laird GK, Lunter G, Meader S, Mort
M, Mullikin JC, Munch K, O’Connor TD, Phillips AD, Prado-Martinez J, Rogers AS, Sajjadian S,
Schmidt D, Shaw K, Simpson JT, Stenson PD, Turner DJ, Vigilant L, Vilella AJ, Whitener W, Zhu
B, Cooper DN, de Jong P, Dermitzakis ET, Eichler EE, Flicek P, Goldman N, Mundy NI, Ning Z,
Odom DT, Ponting CP, Quail MA, Ryder OA, Searle SM, Warren WC, Wilson RK, Schierup MH,
Rogers J, Tyler-Smith C, Durbin R. Nature 483(7388):169-75, 2012

Detection of Structural Variants and INDELs from Exome Data, Emre Karakoc, Can Alkan,
Brian J. ORoak, Megan Dennis, Laura Vives, Kenneth Mark, Mark J. Rieder, Debbie A. Nickerson,
Evan E. Eichler, Nature Methods, 9(2):176-8, Dec 2011

Exome sequencing in sporadic autism reveals severe de novo mutations, Brian J. O’Roak, P.
Derizioti, C. Lee. L. Vives, J. J. Schwartz, S. Girirajan, E. Karakoc, A. P. MacKenzie, S. Ng,
C. Baker, M. Rieder, D. Nickerson, R. Bernier, S. Fisher, J. Shendure and E. E. Eichler, Nature
Genetics, Nature Genetics 43, 585589, 2011.

Error tolerant NMR backbone resonance assignment and automated structure generation, B.
Alipanahi, X. Gao, E. Karakoc, S.C. Li, F. Balbach, G. Feng, L. Donaldosn, and M. Li, Journal
of Bioinformatics and Computational Biology (JBCB), 0(1): 1-26, 2011.

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Adı Soyadı Dr.Öğr.Üye. Guvanchmyrat OVEZMYRADOV
E-Posta guvanch@medipol.edu.tr
Detay Öz Geçmiş
Medya

Daha Önce Görev Yaptığı Yerler

Araştırma Alanları

Seçili Yayınları / Tüm Yayınları

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Adı Soyadı Dr.Öğr.Üye. Hasan KURT
E-Posta hasankurt@medipol.edu.tr
Detay Öz Geçmiş
Medya

Sabancı University 2006 Sabancı Üniversitesi

Daha Önce Görev Yaptığı Yerler

Sabancı Üniversitesi

Araştırma Alanları

Nanoteknoloji Plazmonik Biyosensörler Fotovoltaikler Malzeme Karakterizasyonu

Seçili Yayınları / Tüm Yayınları

SCI/SCI-E Indexed Publications

1. A. Yenenler, H. Kurt, O.U. Sezerman, “Enhancing enzymatic properties of endoglucanase I enzyme from Trichoderma reesei via swapping from cellobiohydrolase I enzyme”, Catalysts,9 (2), 130, 2019.

2. M. Yuce, H. Kurt , B. Hussain, C. W. Ow-Yang, H. Budak, “Exploiting Stokes and anti-Stokes type emission profiles of aptamer-functionalized luminescent nanoprobes for multiplex sensing applications”, ChemistrySelect, 3, 5814-5823, 2018.

3. M. Yuce & H. Kurt, “How to make nanobiosensors: surface modification and characterization nanomaterials for biosensing applications”, RSC Advances, 7, 49386-49403, 2017.

4. S. Avaz, O. Oguz, H. Kurt, Y.Z. Menceloglu, C. Atilgan, “Soft segment length controls morphology of poly(ethylene oxide) based segmented poly(urethane-urea) copolymers in a binary solvent”, Computational Materials Science, 138, 58-69, 2017.

5. S. Khabbaz Abkenar, A. Tufani, G. Ince, H. Kurt, A. Turak, C.W. Ow-Yang, “Transfer Printing Gold Nanoparticle Arrays with Thermo-Responsive Poly N-isopropylacrylamide (pNIPAAm)”, Nanoscale, 9, 2969-2973, 2017.

6. H. Kurt, E. Alpaslan, B. Yildiz, C. W. Ow-Yang, “Conformation-mediated Förster resonance energy transfer (FRET) in blue-emitting polyvinylpyrrolidone(PVP)-passivated zinc oxide (ZnO) nanoparticles”, Journal of Colloid and Interface Science, 488, 348-355, 2017.

7. H. Kurt & C. W. Ow-Yang, “Impedance Spectroscopy Analysis of the Photophysical Dynamics due to the Nanostructuring of Anode Interlayers in Organic Photovoltaics”, Physica Status Solidi A, doi:10.1002/pssa.201600314, 2016.

8. H. Kurt, M. Yuce, B. Hussain, H. Budak, “Dual-Excitation Upconverting Nanoparticle and Quantum Dot Aptasensor for Multiplexed Food Pathogen Detection”, Biosensors and Bioelectronics, 81, 280-286, 2016.

9. H. Kurt, J. Jia, Y. Shigesato, C. W. Ow-Yang, “Tuning Hole Charge Collection Efficiency in Polymer Photovoltaics by Optimizing the Work function of Indium Tin Oxide Electrodes with Solution-processed LiF Nanoparticles”, Journal of Materials Science: Materials in Electronics, 26 (11), 9205-9212, 2015.

10. M. Yuce, H. Kurt, VRRS. Mokkapati, H. Budak, “Employment of nanomaterials in polymerase chain reaction: insight into the impacts and putative operating mechanisms of nano-additives in PCR”, RSC Advances, 4 (69), 36800-36814, 2014.

11. M. Yuce, H. Kurt, and H. Budak, “Characterization of a dual biotin tag for improved single stranded DNA production”, Analytical Methods, 6 (2), 548-557, 2014.

Book Chapters

1. M. Yuce, H. Kurt, B. Hussain, H. Budak, “Systematic Evolution of Ligands by Exponential Enrichment (SELEX) for Aptamer Selection”, Biomedical Applications of Functionalized Nanomaterials, Ed. B. Sarmento & J. das Neves, Elsevier, March 1st 2018.

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Adı Soyadı Dr.Öğr.Üye. Elif HOCAOĞLU ÇETİNSOY
E-Posta ehocaoglu@medipol.edu.tr
Detay Öz Geçmiş
Medya

Yıldız Teknik Üniversitesi 2005 Sabancı Üniversitesi

Daha Önce Görev Yaptığı Yerler

Italian Institute of Technology (IIT) - Advanced Robotics Laboratory Imperial College London - Human Robotics Laboratory

Araştırma Alanları

İnsan-makine etkileşimi, sEMG tabanlı kontrol arayüzleri, akıllı üst ekstremite protezleri, rehabilitasyon robotiği, yardımcı cihazlar, giyilebilir robotik.

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